John P. Huelsenbeck

John P. Huelsenbeck

Professor

Email: johnh@berkeley.edu
Phone: (510) 502-5887
Lab Webpage: http://cteg.berkeley.edu/huelsenbeck.html

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Research Description

Selected Publications

Huelsenbeck, J. P., B. Rannala, and J. P. Masly. 2000. Accommodating phylogenetic uncertainty in evolutionary studies. Science 288:2349-2350.

Huelsenbeck, J. P., F. Ronquist, R. Nielsen, and J. P. Bollback. 2001. Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294:2310-2314.

Huelsenbeck, J. P., B. Larget, R. E. Miller, and F. Ronquist. 2002. Potential applications and pitfalls of Bayesian inference of phylogeny. Systematic Biology 51(5):673-688.

Huelsenbeck, J. P., B. Larget, and M. E. Alfaro. 2004. Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo. Molecular Biology and Evolution 21(6):1123-1133.

Guindon, S., A. G. Rodrigo, K. A. Dyer, and J. P. Huelsenbeck. 2004. Modeling the site-specific variation of selection patterns along lineages. Proceedings of the National Academy of Sciences, U.S.A. 101(35):12957-12962.

Huelsenbeck, J. P., and B. Rannala. 2004. Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Systematic Biology 53(6):904-913.

Huelsenbeck, J. P., S. Jain, S. W. D. Frost, and S. L. K. Pond. 2006. A Dirichlet process model for detecting positive selection in protein-coding DNA sequences. Proceedings of the National Academy of Sciences, U.S.A. 103(16):6263-6268.