Publications

82. Hykin, S. M., K. Bi, and J. A. McGuire. 2015. Fixing formalin: A method to recover genomic-scale DNA sequence data from formalin-fixed museum specimens using high-throughput sequencing. PLoS ONE.

81. González, A. M. M., plus 37 co-authors. 2015. The macroecology of of phylogenetically structured hummingbird-plant networks. Global Ecology and Biogeography 24:1212-1224. Click here for a PDF copy

80. Abrahamczyk, S., D. Souto-Vilarós, J. A. McGuire, and S. S. Renner. 2015. Diversity and clade ages of the West Indian hummingbirds and of the largest plant clades dependent on them: A 5-9 Myr young mutualistic system. Biological Journal of the Linnean Society. Click here for a PDF copy

79. Benham, P. M, A. M. Cuervo, J. A. McGuire, and C. C. Witt. 2014. Biogeography of the Andean metaltail hummingbirds: contrasting evolutionary histories of tree-line and habitat-generalist clades. Journal of Biogeography. Click here for a PDF copy

78. Stenglein, M. D., E. Leavitt, M. Abramovitch, J. A. McGuire, and J. L. DeRisi. 2014. Genome sequence of a bornavirus recovered from an African garter snake (Elapsoidea loveridgei). Genome Announcements 2(5):e00779-14. Click here for a PDF copy

77. Iskandar, D. T., B. J. Evans, and J. A. McGuire. 2014. A novel reproductive mode in frogs: A new species of fanged frog with internal fertilization and birth of tadpoles. PLoS ONE 9(12): e115884. Click here for a PDF copy

76. Husak, J. F., and J. A. McGuire. 2014. Does 'gliding while gravid' explain Rensch's rule in flying lizards? Biological Journal of the Linnean Society 113:270-282. Click here for a PDF copy

75. Weinstein, B. G., B. Tinoco, J. Parra, L. M. Brown, J. A. McGuire, F. G. Stiles, and C. H. Graham. 2014. Taxonomic, phylogenetic and trait betadiversity in South American hummingbirds. American Naturalist 184:211-224. Click here for PDF copy

74. Peñalba, J. V., L. L. Smith, M. A. Tonione, C. Sass, S. M Hykin, P. L. Skipwith, J. A. McGuire, R. C. K. Bowie, and C. Moritz. 2014. Sequence Capture using PCR-generated Probes (SCPP): A cost-effective method of targeted hgh-throughput sequencing for non-model organisms. Molecular Ecology Resources 14:1000-1010. Click here for a PDF copy

73. Rocha, L. A. plus 121 co-authors. 2014. Collecting biological specimens is essential in science and conservation. Science 344(6186):814-815. Click here for PDF copy
 
72. Grismer, L. L.,  A. Riyanto, D. T. Iskandar, and J. A. McGuire. 2014. A new species of Hemiphyllodactylus Bleeker, 1860 (Squamata: Gekkonidae) from Pulau Enggano, southwestern Sumatra, Indonesia. Zootaxa 3821(4):485-495.  Click here for PDF copy

71. McGuire, J. A., C. C. Witt, J. V. Remsen, Jr., A. Corl, D. L. Rabosky, D. L. Altshuler, and R. Dudley. 2014. Molecular phylogenetics and the diversification of hummingbirds (Apodiformes: Trochilidae). Current Biology 24:910-916. Click here for PDF copy without supplemental materials and Click here for PDF copy with supplemental materials

70. Grismer, L. L., P. L. Wood, Jr., S. Anuar, M. A. Muin, E. S. H. Quah, J. A. McGuire, R. M. Brown, and N. V. Tri. 2013. Integrative taxonomy uncovers high levels of cryptic species diversity in Hemiphyllodactylus Bleeker, 1860 (Squamata: Gekkonidae) and the description of a new species from Peninsular Malaysia. Zoological Journal of the Linnean Society 169:849-880. Click here for PDF copy

69. Projecto-Garcia, J., C. Natarajan, H. Moriyama, R. E. Weber, A. Fago, Z. A. Cheviron, R. Dudley, J. A. McGuire, C. C. Witt, and J. F. Storz. 2013. Repeated elevational transitions in hemoglobin function during the evolution of Andean hummingbirds. Proceedings of the National Academy of Sciences of the United States 110(51):20669-20674. Click here for PDF copy

68. Devitt, T. J., S. E. Cameron Devitt, B. D. Hollingsworth, J. A. McGuire, and C. Moritz. 2013. Montane refugia predict population genetic structure in the Large-blotched Ensatina salamander. Molecular Ecology 22:1650-1665. Click here for PDF copy

67. Blackburn, D. C., C. D. Siler, A. C. Diesmos, J. A. McGuire, D. C. Cannatella, and R. M. Brown. 2013. An adaptive radiation of frogs in a Southeast Asian island archipelago. Evolution 67:2631-2646. Click here for PDF copy

66. Fujita, M. K., A. D. Leaché, F. T. Burbrink, J. A. McGuire, and C. Moritz. 2012. Coalescent-based species delimitation in an integrative taxonomy. Trends in Ecology and Evolution 27:480-488. Click here for PDF copy

65. Brown, R. M., C. D. Siler, L. L. Grismer, I. Das, and J. A. McGuire. 2012. Phylogeny and cryptic diversification in Southeast Asian flying geckos. Molecular Phylogenetics and Evolution 65:351-361. Click here for PDF copy

64. Linkem, C. W., R. M. Brown, C. D. Siler, C. C. Austin, D. T. Iskandar, A. C. Diesmos, J. Supriatna, N. Andayani, and J. A. McGuire. 2013. Stochastic faunal exchanges drive diversification in widespread Wallacean and Pacific Island lizards, (Squamata: Scincidae: Lamprolepis smaragdina). Journal of Biogeography 40:507-520. Click here for PDF copy

63. González-Caro, S., J. L. Parra, C. H. Graham, J. A. McGuire, C. D. Cadena. 2012. Sensitivity of metrics of phylogenetic structure to scale, source of data and species pool of hummingbird assemblages along elevational gradients. PLoS ONE 7(4): e35472. doi:10.1371/journal.pone.0035472. Click here for PDF copy

62. Rahmi, Y., M. Kamsi, J. A. McGuire, D. P. Bickford, and D. T. Iskandar. 2012. The distribution of Gonocephalus species (Reptilia, Iguania, Agamidae) on Sumatra, Indonesia. The 2nd International Symposium for Sustainable Humanosphere pgs. 119-128. Click here for PDF copy

61. Swei, A, J. J. L. Rowley, D. Rödder, M. L. L. Diesmos, A. C. Diesmos, C. J. Briggs, R. M. Brown, T. T. Cao, T. L. Cheng, R. A. Chong, B. Han, J.-M. Hero, H. D. Hoang, M. D. Kusrini, D. T. T. Le, J. A. McGuire, M. Meegaskumbura, M.-S. Min, D. G. Mulcahy, T. Neang, S. Phimmachak, D.-Q. Rao, N. M. Reeder, S. D. Schoville, N. Sivongxay, N. Srei, M. Stöck, B. L. Stuart, L. S. Torres, D. T. A. Tran, T. S. Tunstall, D. Vieites, and V. T. Vredenburg. 2011. Is Chytridiomycosis an Emerging Infectious Disease in Asia? PLoS ONE 6:e23179. Click here for PDF copy

60. Swei, A, J. J. L. Rowley, D. Rödder, M. L. L. Diesmos, A. C. Diesmos, C. J. Briggs, R. Brown, T. T. Cao, T. L. Cheng, R. A. Chong, B. Han, J.-M. Hero, H. D. Hoang, M. D. Kusrini, D. T. T. Le, J. A. McGuire, M. Meegaskumbura, M.-S. Min, D. G. Mulcahy, T. Neang, S. Phimmachak, D.-Q. Rao, N. M. Reeder, S. D. Schoville, N. Sivongxay, N. Srei, M. Stöck, B. L. Stuart, L. S. Torres, D. T. A. Tran, T. S. Tunstall, D. Vieites, and V. T. Vredenburg. 2011. Prevalence and distribution of chytridiomycosis throughout Asia. FrogLog 98:33-34. Click here for PDF copy

59. Riyanto, A., Mumpuni, and J. A. McGuire. 2011. Morphometry of striped tree frogs, Polypedates leucomystax (Gravenhorst, 1829) from Indonesia with description of a new species. Russian Journal of Herpetology 18:29-35. Click here for PDF copy

58. McGuire, J. A., and R. Dudley. 2011. The biology of gliding in flying lizards (Genus Draco) and their fossil and extant analogs. Integrative and Comparative Biology 51:983-990. Click here for PDF copy

57. Parra, J. P., C. Rahbek, J. A. McGuire , and C. H. Graham. 2011. Contrasting patterns of phylogenetic structure along environmental gradients for hummingbird clades. Journal of Biogeography 38:2350-2361. Click here for PDF copy

56. Setiadi, M. I. , J. A. McGuire, R. M. Brown, M. Zubairi, D. T. Iskandar, N. Andayani, J. Supriatna, and B. J. Evans. 2011. Adaptive radiation and ecological opportunity in Sulawesi and Philippine fanged frog (Limnonectes) communities. American Naturalist 178:221-240. Click here for PDF copy

55. Buermann, W., J. Chaves, R. Dudley, J.A. McGuire, T. Smith, and D.L. Altshuler. 2011. Projected changes in elevational distribution and flight performance of montane Neotropical hummingbirds in response to climate change. Global Change Biology 17:1671-1680. Click here for PDF copy

54. Parra, J. P., C. H. Graham, and J. A. McGuire. 2010. Incorporating lineage identity in analyses of phylogenetic community structure: an example with hummingbirds. American Naturalist 176:573-587. Click here for PDF copy

53. Brown, R. M., C W. Linkem, C. D. Siler, J. Sukumaran J. A. Esselstyn, A. C. Diesmos, D. T. Iskandar, D. Bickford, B. J. Evans, J. A. McGuire, J. Supriatna, and N. Andayani. 2010. Paradoxical distribution of genetic diversity in a "widespread" treefrog: human-mediated panmixia in a Southeast Asian archipelago? Molecular Phylogenetics and Evolution 57:598-619. Click here for PDF copy

52. Esselstyn, J. A., C. H. Oliveros, R. G. Moyle, A. T. Peterson, J. A. McGuire, and R. M. Brown. 2010. Integrating phylogenetic and taxonomic evidence illuminates complex biogeographic patterns along Huxley’s modification of Wallace’s Line. Journal of Biogeography 37:2054-2066. Click here for PDF copy

51. Fujita, M. K., J. A. McGuire, S. C. Donnellan, and C. Moritz. 2010. Diversification and persistence at the arid-monsoonal interface: Australia-wide biogeography of the Bynoe’s Gecko (Heteronotia binoei; Gekkonidae). Evolution 64:2293-2314. Click here for PDF copy

50. Altshuler, D. L, R. Dudley, S. M. Heredia, and J. A. McGuire. 2010. Allometry of hummingbird lifting performance. Journal of Experimental Biology 213:725-734. Click here for PDF copy

49. Genome 10K Community of Scientists (66 co-authors). 2009. Genome 10K: A proposal to obtainwhole-genome sequences for 10,000 vertebrate species. Journal of Heredity 100:659-674. Click here for PDF copy

48. Kirchman, J. J., C. C. Witt, J. A. McGuire, and G. R. Graves. 2009. DNA from 100-year old holotype confirms the validity of a potentially extinct hummingbird species. Biology Letters 6:112-115. Click here for PDF copy

47. Graham, C. H., J. L. Parra, C. Rahbek, and J. A. McGuire. 2009. Phylogenetic community structure in Andean hummingbird communities. PNAS 106:19673-19678. Click here for PDF copy

46. Koch, A., E. Arida, J. A. McGuire, D. T. Iskandar, and W. Bohme. 2009. Anew species of Calamaria (Squamata: Colubridae) similar to C. ceramensis de Rooij, 1913, from the Banggai Islands, east of Sulawesi, Indonesia. Zootaxa 2196:19-30. Click here for PDF copy

45. Gregory, T. R., C. B. Andrews, J. A. McGuire, and C. C. Witt .2009. The smallest avian genomes are found in hummingbirds. Proceedings of the Royal Society B 276:3753-3757. Click here for PDF copy

44. Leaché, A. D., M. S. Koo, R. N. Fisher, and J. A. McGuire. 2009. Quantifying ecological, morphological, and genetic variation to delimit species in the coast horned lizard species complex (Phrynosoma). PNAS 106:12418-423. Click here for PDF copy

43. Macedonia, J. M., A. K Lappin, E. O. Loew, J. A. McGuire, P. S. Hamilton, M. Plasman, Y. Brandt, J. A. Lemos-Espinal, and D. J. Kemp. 2009.Conspicuousness of Dickerson's collared lizard (Crotaphytus dickersonae) through the eyes of conspecifics and predators. Biological Journal of the Linnean Society 97:749-765. Click here for PDF copy

42. Brandley, M. C., A. D. Leaché, D. L. Warren, and J. A. McGuire. 2009. Homoplasy and clade support. Systematic Biology 50:184-198. Click here for PDF copy

41. McGuire, J. A., C. C. Witt, J. V. Remsen, Jr., R. Dudley, and D. L. Altshuler. 2009. A higher-level taxonomy for hummingbirds. Journal of Ornithology 150:155-165. Click here for PDF copy

40. Koch, A., J. A. McGuire, E. Arida, A. Riyanto, and A. Hamidy. 2009. First record of gekko smithii Gray, 1842 (Reptilia: Gekkonidae) from Sulawesi, Indonesia. Salamandra 45:172-176. Click here for PDF copy

39. Linkem, C. W., J. A. McGuire, C. J. Hayden, B. J. Evans, S. Lawalata, M. I. Setiadi, Umilaela, D. P. Bickford, T. Townsend, D. T. Iskandar, J. Supriatna, and R. M. Brown. 2008.  A new species of bent-toed gecko (Gekkonidae: Cyrtodactylus) form Sulawesi Island, eastern Indonesia. Herpetologica 64:224-234. Click here for PDF copy

38. Evans, B. J., J. A. McGuire, R. M. Brown, N. Andayani, and J. Supriatna. 2008. A coalescent framework for comparing alternative models of population structure with genetic data: evolution of Celebes toads. Biology Letters 4:430-433. Click here for PDF copy

37. Hayden, C. J., R. M. Brown, G. Gillespie, M. I. Setiadi, Umilaela, C. W. Linkem, D. Bickford, A. Riyanto, Mumpuni, and J. A. McGuire. 2008. A new species of bent-toed gecko Cyrtodactylus Gray 1827 (Squamata: Gekkonidae) from the island of Sulawesi, Indonesia. Herpetologica 64:109-120. Click here for PDF copy

36. Devitt, T. J., T. J. LaDuc, and J. A. McGuire. 2008. A multivariate statistical analysis of morphological variation in the Trimorphodon biscutatus complex (Squamata: Colubridae). Copeia 2008:370-387. Click here for PDF copy

35. Jiang, Zhi J, T. A. Castoe, C. C. Austin, F. T. Burbrink, M. D. Herron, J. A. McGuire, C. L. Parkinson, and D. D. Pollock. 2007. Comparative mitochondrial genomics of snakes: extraordinary substitution rate dynamics and functionality of the duplicate control region. BMC Evolutionary Biology 7:123. Click here for PDF copy

34. McGuire, J. A., C. W. Linkem, M. Koo, D. W. Hutchison, A. K. Lappin, D. O. Orange, J. Lemos-Espinal, B. R. Riddle, and J. Jaeger. 2007. Mitochondrial introgression and incomplete lineage sorting through space and time: Phylogenetics of crotaphytid lizards. Evolution 61:2879-2897. Click here for PDF copy

33. McGuire, J. A., C. C. Witt, D. L. Altshuler, and J. V. Remsen, Jr. 2007. Phylogenetic systematics and biogeography of hummingbirds: Bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy. Systematic Biology 56:837-856. Click here for PDF copy

32. McGuire, J. A., R. M. Brown, Mumpuni, A. Riyanto, and N. Andayani. 2007. The flying lizards of the Draco lineatus group (Squamata: Iguania: Agamidae): A taxonomic revision with descriptions of two new species. Herpetological Monographs 21:180-213. Click here for PDF copy

31. Bickford, D. P., J. Supriatna, N. andayani, D. T. Iskandar, B. J. Evans, R. M. Brown, T. Townsend, Umilaela, D. Azhari, and J. A. McGuire. 2007. Indonesia’s protected areas need more protection – suggestions from island examples. In Sodhi, N. S., G. Acciaioli, M. Erb, and A. K.-J. Tan (Eds.) Biodiversity and human livelihoods in protected areas. Cambridge University Press, Cambridge UK, pp 53-78. Click here for PDF copy

30. Dudley, R., G. Byrnes, S. P. Yanoviak, B. Borrell, R. M. Brown, and J. A. McGuire. 2007. Gliding and the functional origins of flight: biomechanical novelty or necessity? Annual Review of Ecology, Evolution, and Systematics 38:179-201. Click here for PDF copy

29. Grismer, L. Lee, J. L. Grismer, and J. A. McGuire. 2006. A new species of pitviper of the genus Popeia (Squamata: Viperidae) from Pulau Tioman, Pahang, West Malaysia. Zootaxa 1305:1-19. Click here for PDF copy

28. Leaché, A. D., and McGuire, J. A. 2006. Phylogenetic relationships of horned lizards (Phrynosoma) based on nuclear and mitochondrial data: Evidence for a misleading mitochondrial gene tree. Molecular Phylogenetics and Evolution 39:628-644. Click here for PDF copy

27. Kuch, U., J. A. McGuire, and F. B. Yuwono. 2006. Death adders (Acanthophis laevis complex) from the island of Ambon (Maluku, Indonesia). Herpetozoa 19:81-82. Click here for PDF copy

26. Brandley, M. C., A. D. Leaché, D. L. Warren, and J. A. McGuire. 2006. Are unequal clade priors problematic for Bayesian phylogenetics? Systematic Biology 55:138-146. Click here for PDF copy

25. McGuire, J. A., and R. Dudley. 2005. The cost of living large: Comparative gliding performance in flying lizards (Draco). American Naturalist 166:93-106. Click here for PDF copy

24. Altshuler, D. L., R. Dudley, and J. A. McGuire. 2004. Resolution of a paradox: Hummingbird flight at high elevations does not come without a cost. PNAS 101:17731-736. Click here for PDF copy

23. Kuch, U., and J. A. McGuire. 2004. Range extensions of Lycodon capucinus BOIE, 1827 in eastern Indonesia. Herpetozoa 17:191-193.

22. Evans, B. J., R. M. Brown, J. A. McGuire, J. Supriatna, N. Andayani, A. Diesmos, D. J. Melnick, and D. C. Cannatella. 2003. Phylogenetics of fanged frogs: testing biogeographical hypotheses at the interface of the Asian and Australian faunal zones. Systematic Biology 52:1-29. Click here for PDF copy

21. McGuire, J. A. 2003. Allometric prediction of locomotor performance: An example from Southeast Asian flying lizards. American Naturalist 161:347-369. Click here for PDF copy

20. Hillis, D. M., D. D. Pollock, J. A. McGuire, and D. J. Zwickl. 2003. Is sparse taxon sampling a problem for phylogenetic inference? Systematic Biology 52:124-126. Click here for PDF copy

19. Pollock, D. D., D. J Zwickl, J. A. McGuire, and D. M. Hillis. 2002. Increased taxon sampling is advantageous for phylogenetic inference. Systematic Biology 51:664-671. Click here for PDF copy

18. Grismer, L. L., J. A. McGuire, R. A. Sosa, and H. Kaiser. 2002. Revised checklist and comments on the terrestrial herpetofauna of Pulau Tioman, Peninsular Malaysia. Herpetological Review 33:26-29.

17. Hallermann, J., and J. A. McGuire. 2001. A new species of Pseudocalotes (Squamata: Agamidae) from Bukit Larut, West Malaysia. Herpetologica 57:255-265. Click here for PDF copy

16. McGuire, J. A., and Kiew, B.-H. 2001. Phylogenetic systematics of Southeast Asian flying lizards (Iguania: Agamidae: Draco) as inferred from mitochondrial DNA sequence data. Biological Journal of the Linnean Society 73:203-229. Click here for PDF copy

15. Brown, R. M., J. A. McGuire, J. W. Ferner, N. Icarangal, Jr., and R. S. Kennedy. 2000. Amphibians and reptiles of Luzon Island, II: Preliminary report on the herpetofauna of Aurora Memorial National Park, Philippines. Hamadryad 25:175-195. Click here for PDF copy

14. McGuire, J. A. 2000. Crotaphytus vestigium Smith and Tanner, 1972 (Reptilia, Squamata): proposed conservation of the specific name. Bulletin of Zoological Nomenclature 57(3):1-4.

13. McGuire, J. A., and A. C. Alcala. 2000. A taxonomic revision of the flying lizards of the Philippine Islands (Iguania: Agamidae: Draco), with a description of a new species. Herpetological Monographs 14:81-138. Click here for PDF copy

12. Brown, R. M., J. A. McGuire, and A. C. Diesmos. 2000. Status of some frogs related to Rana everetti (Anura: Ranidae); description of a new species and resurrection of R. igorota. Herpetologica 56(1):81-104. Click here for PDF copy

11. Brown, R. M., J. A. McGuire, J. W. Ferner, and A. C. Alcala. 1999. New species of diminutive scincid lizard (Squamata; Lygosominae: Sphenomorphus) from Luzon Island, Republic of the Philippines. Copeia 1999:362-370. Click here for PDF copy

10. Smith, H. M., L. E. Brown, D. Chiszar, L. L. Grismer, G. S. Allen, A. Fishbein, B. D. Hollingsworth, J. A. McGuire, V. Wallach, P. Strimple, and E. A. Liner. 1998. Crotalus ruber Cope, 1892 (Reptilia, Serpentes): proposed precedence of the specific name over that of Crotalus exsul Garman, 1884. Bulletin of Zoological Nomenclature 55(4):229-232.

9. Messenger, S. L., and J. A. McGuire. 1998. Morphology, molecules, and the phylogenetics of cetaceans. Systematic Biology 47(1):90-124. Click here for PDF copy

8. McGuire, J. A. 1998. Phylogenetic systematics, scaling relationships, and the evolution of gliding performance in flying lizards (genus Draco). Ph.D. dissertation, University of Texas at Austin. Click here to access a PDF version of my dissertation

7. McGuire, J. A. 1996. Phylogenetic systematics of crotaphytid lizards. Bulletin of the Carnegie Museum No. 32:1-143. Click here for PDF copy

6. Grismer, L. L., and J. A. McGuire. 1996. The systematics, classification, and biogeography of the Sceloporus magister complex. Herpetologica 52(3):416-427. Click here for PDF copy

5. McGuire, J. A. 1994. A new species of collared lizard (Iguania: Crotaphytidae) from Northeastern Baja California, México. Herpetologica 50(4):438-450. Click here for PDF copy

4. Grismer, L. L., J. A. McGuire, and B. D. Hollingsworth. 1994. A report on the herpetofauna of the Vizcaíno Peninsula, Baja California, México, with a discussion of its biogeographic and taxonomic implications. Bulletin of the Southern California Academy of Sciences 93:45-80.

3. McGuire, J. A., and L. L. Grismer. 1993. The taxonomy and biogeography of Thamnophis hammondii and T. digueti (Reptilia: Squamata: Colubridae) in Baja California, México. Herpetologica 49(3):354-65. Click here for PDF copy

2. Grismer, L. L., and J. A. McGuire. 1993. The oases of central Baja California, México. Part I. A preliminary account of the relictual mesophilic herpetofauna and the status of the oases. Bulletin of the Southern California Academy of Sciences 92:2-24.

1. Cooper, W. E., and J. A. McGuire. 1993. Progesterone induces bright orange throat coloration in female Petrosaurus mearnsi. Amphibia-Reptilia 14:213-221.