Integrative Biology 200B Spring 2007
"PRINCIPLES OF PHYLOGENETICS: ECOLOGY AND EVOLUTION"
Most important recommended readings are
in bold face; required readings also have two asterisks
April 10 - 12: BIOGEOGRAPHY
Alroy, J. 1995. Continuous track analysis: a
new phylogentic and biogeographic
method. Syt. Biol. 44(2):152-178.
Avise, J. C., J. Arnold, R. M. Ball, E. Bermingham, T. Lamb, J. E. Neigel,
C. A. Reeb and N. C. Saunders. 1987. Intraspecific phylogeography: the
mitochondrial DNA bridge between population genetics
and systematics. Ann. Rev. Ecol. Syst.
18:489-522.
Baldwin, B. G., D. W. Kyhos
and J. Dvorak. 1990. Chloroplast DNA evolution and adaptive radiation in the
Hawaiian silversword alliance (Asteraceae-Madiinae).
Baldwin, B. G. and R.
H. Robichaux. 1995. Historical biogeography and ecology of the Hawaiian silversword alliance (Asteraceae):
New molecular phylogenetic perspectives.Pp. 259-287. In Wagner, W. L. and V. Funk (Eds.)
Hawaiian Biogeography, Evolution on a Hot Spot Archipelago. Smithsonian
Institution Press, Washington.
Baldwin, B. G., and
Sanderson, M. J. (1998).
“Age and rate of diversification of the Hawaiian silversword alliance (Compositae).”
Proceedings of the
Ball, I.R. 1976. Nature
and formulation of biogeographical hypotheses.
Syst. Zool.
24:407-430.
Brooks, D.R., & D.
McLennan. 1991. Phylogeny,
Ecology, and Behavior.
Brooks,
D. R. 1990. Parsimony analyisis in historical
biogeography and coevolution: Methodological and
theoretical update. Syst. Zool.
39:14-30.
Carpenter, J M. Phylogeny and biogeography of Polistes.
Turillazzi,
S. and M. J. West-Eberhard (Ed.). Natural history and evolution of paper-wasps; International
Workshop,
Coscaron, M D C; Morrone,
J J. Cladistics and
biogeography of the assassin bug genus Melanolestes Stal (Heteroptera: Reduviidae). Proceedings of the Entomological Society of
Washington, v.99, n.1, (1997): 55-59.
Cracraft, J. Cladistic analysis and vicariance
biogeography. Slatkin, M.
(Ed.). Exploring evolutionary biology:
De Meyer, M. Cladistic
and biogeographic analyses of Hawaiian Pipunculidae (Diptera)revisited. Cladistics, v.12, n.4, (1996): 291-303.
Emerson, B C; Wallis, G
P; Patrick, B H. Biogeographic area
relationships in southern
Enghoff, H.
Historical biogeography of the Holarctic: Area
relationships, ancestral areas, and dispersal of non-marine animals. Cladistics, v.11, n.3, (1995): 223-263.
Evans, B J; Morales, J C; Picker, M D;
Kelley, D B; Melnick, D J. Comparative molecular phylogeography of two Xenopus
species, X. gilli and X. laevis,
in the south-western Cape Province, South Africa. Molecular Ecology, v.6, n.4, (1997): 333-343.
Grant, P. R. (1998). “Radiations,
communities, and biogeography.” Evolution on islands, P. R. Grant, ed.,
Oxford University Press, New York, New York, USA; Oxford, England, UK, 196-209.
Gray, J. and
A.J. Boucot (eds.). 1979.
Historical Biogeography, Plate Tectonics, and the
Changing
Environment,
Kluge, A. G. 1988. Parsimony in vicariance
biogeography: a quantitative method and a greater Antillean example. Syst. Zool. 37:315-328.
Linder, H P; Crisp, M
D. Nothofagus and Pacific biogeography. Cladistics, v.11,
n.1, (1995): 5-32.
Lydeard, C. M.C. Wooten, and
A. Meyer. 1995.
Molecules, morphology and area cladeograms: a cladistic and biogeographic
analysis of Gambusia (Teleostei:
Poecilliiae) Syst. Biol.
44:221-236.
Minaka, N. Vicariance
in historical biogeography: Analytical problems in reconstructing area cladograms. Acta Phytotaxonomica et Geobotanica, v.44, n.2, (1993):
151-184. Language: Japanese.
Morrone J.J. and Carpenter,
J.M. 1994. In search
of a method for cladistic biogeography - an comparison of component analysis, brooks parsimony
analysis, and three area statements. Cladistics
10(2):99-153.
Nelson, G. 1985. A
decade of challenge the future of biogeography. Earth Sciences History
4(2):187-196.
Nelson, G. and N. Platnick.
1981. Systematics and biogeography. Cladistics and vicariance.
Nelson, G. and Rosen, D.E. (eds.). 1981. Vicariance
biogeography: a critique.
Nelson, G; Ladiges, P Y. Paralogy in cladistic biogeography and analysis of paralogy-freesubtrees.
American Museum Novitates, n.3167, (1996):
1-58.
Page, R. D. M. 1989. Comments on component-compatibility in
historical biogeography.Cladistics 5: 167-182.
Page, R. D. M. 1994. Maps between trees and
cladistic analysis of historical associations among
genes, organisms, and areas. Syst. Biol. 43:
58-77.
Page, R.D.M. 1994. Parallel phylogenies -
reconstructing the history of host-parasite assemblages. Cladistics 10(2): 155-173
Pielou, E. C. 1979. Biogeography.
John Wiley and Sons;
Rosen, D. E. 1975. A vicariance model of
Rosen, D. E. 1978. Vicariant patterns and historical
explanation in biogeography. Syst. Zool. 27: 159-188.
Rosen, D. E. 1979. Fishes from the upland
and intermontane basins of
Siddall, M E. Phylogenetic covariance
probability: Confidence and historical associations.
Systematic
Biology, v.45, n.1, (1996): 48-66.
Springer, V. G. 1982. Pacific plate
biogeography, with special reference to shorefishes.
Smithsonian
Contributions to Zoology 367:1-167.
Swenson, U. and K.
Bremer. 1997. Pacific
Biogeography of the Asteraceae genus Abrotanella (Senecioneae, Belnnospermatinae). Systematic Botany 22: 493-508.
Vermeij, G. J. 1978. Biogeography
and adaptation.
Wagner, W L. Hawaiian biogeography:
Evolution on a hot spot archipelago. Wagner, W. L. and V. A.
Funk (Ed.). Hawaiian biogeography: Evolution on a hot spot archipelago. xvii+467p. Smithsonian Institution Press:
Weston, P H; Crisp, M D. Cladistic biogeography of waratahs
(Proteaceae:Embothrieae) and
their allies across the Pacific. Australian Systematic Botany, v.7, n.3,
(1994): 225-249.
Wiley, E. O. 1981. Phylogenetics:
the theory and practice of phylogenetic systematics.
John Wiley and Sons,