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Integrative Biology 200B                                                                                                                                                        Spring 2009

 

"PRINCIPLES OF PHYLOGENETICS:  ECOLOGY AND EVOLUTION"

 

Basic Info on Phylogenetics

 A primer on phylogenetics from the UCMP web site  http://evolution.berkeley.edu/evolibrary/article/phylogenetics_01

More basic info about phylogenetics from  the Tree of Life http://www.tolweb.org/tree/learn/concepts/concepts.html

Software

Felsenstein's exhaustive list of phylogenetics programs http://evolution.genetics.washington.edu/phylip/software.html

Mesquite http://mesquiteproject.org/

R http://www.r-project.org/

BEAST http://beast.bio.ed.ac.uk/