#NEXUS [written Thu Jan 31 15:49:51 PST 2008 by Mesquite version 1.12 (build h66) at vlsb-2103-11.lib.berkeley.edu/128.32.146.57] BEGIN TAXA; TITLE Caminalcules; DIMENSIONS NTAX=10; TAXLABELS taxon_1 taxon_3 taxon_5 taxon_7 taxon_9 taxon_31 taxon_33 taxon_35 taxon_37 taxon_39 ; END; BEGIN CHARACTERS; TITLE Caminalcules; DIMENSIONS NCHAR=12; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2"; CHARSTATELABELS 1 Eyes, 2 Spots_on_body, 3 Side_Spots, 4 Rounded_Posterior, 5 Neck_Fold, 6 Front_arms, 7 Fingers, 8 Fingernails, 9 Arm_spots, 10 Appendage_Type, 11 Tail_extension, 12 Posterior_Appendage ; MATRIX taxon_1 1111110-0011 taxon_3 2210011101-1 taxon_5 221001100111 taxon_7 002010---011 taxon_9 2020011-1011 taxon_31 2010010-0??? taxon_33 2020010-1011 taxon_35 2121110-0011 taxon_37 2020010-0011 taxon_39 0020010-0011 ; END; BEGIN LABELS; TAXAGROUPLABEL Fossi COLOR = (RGB 0.76078431 0.4 1.0) ; TAXAGROUPLABEL Extant COLOR = (RGB 0.56862745 1.0 0.56862745) ; TAXAGROUPLABEL Fossil COLOR = (RGB 0.30196078 0.858823551 1.0) ; END; BEGIN SETS; TAXPARTITION * UNTITLED = Extant : 1 - 5, Fossil : 6 - 10; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 12; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 12; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 12; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7948380204206577051; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4096942613312027794; tell It; setDefaultOrder 0 1 2 3 4 5 6 7 8 11 14 12; attachments ; endTell; checksum 0 1366841756; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #7948380204206577051 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #7948380204206577051; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setSize 360 400; setLocation 102 226; setFont SanSerif; setFontSize 10; onInfoBar; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4096942613312027794 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setSize 1176 496; setLocation 418 66; setFont SanSerif; setFontSize 10; onInfoBar; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleTight off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleColorsPanel off; birdsEyeWidth 2; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7948380204206577051 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; setTreeSource #mesquite.trees.DefaultTrees.DefaultTrees; setAssignedID 899.1201820427582.5723373405549093948; getTreeWindow; tell It; setSize 520 400; setLocation 463 193; setFont SanSerif; setFontSize 10; onInfoBar; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.DiagonalDrawTree.DiagonalDrawTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; stretchToggle off; branchLengthsToggle off; toggleScale on; toggleCenter off; toggleEven off; namesAngle ?; endTell; setEdgeWidth 12; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; labelBranchLengths off; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleNodeLabels on; toggleShowNames on; endTell; endTell; setTreeNumber 1; useSuggestedSize on; toggleTextOnTree off; endTell; showWindow; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; endTell; endTell; endTell; end;