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Reading
List 9 April 2:
PHYLOGENETICS IN RELATION TO CONSERVATION: Faith, D. P. 1992a. Conservation evaluation and
phylogenetic diversity. Biological Conservation 61:1-10. Faith, D. P. 1992b. Systematics and conservation: on
predicting the feature diversity of subsets of taxa. Cladistics 8:361-373. **Forey, P.L., C. J. Humphries and P. H. Williams. 1994.
Systematics and conservation evaluation, Systematics Association Special Volume No. 50.
Clarendon Press, Mishler, B.D. 1995. Plant systematics and conservation:
science and society. Madroņo 42: 103-113. Moritz,C., J. L. Patton, C. J. Schneider, and T. B. Smith.
2000. DIVERSIFICATION OF RAINFOREST FAUNAS: An Integrated Molecular Approach Annu.
Rev. Ecol. Syst. 31: 533-563 Polhemus, D. A. (1997). “Phylogenetic analysis of
the Hawaiian damselfly genus Megalagrion (Odonata: Coenagrionidae): Implications for
biogeography, ecology, and conservation biology.” Pacific Science, 51(4), 395-412. Tyler, H. A., Brown, K. S., Jr., and Wilson, K. H. (1994).
“Swallowtail butterflies of the conservation.” Vane-Wright, R. I., C. J. Humphries and P. H. Williams.
1991. What to protect? -- Systematics and the agony of choice. Biological
Conservation 55:235-254. April 27: BIOGEOGRAPHY Alroy, J. 1995. Continuous track analysis: a new
phylogentic and biogeographic method. Syt. Biol. 44(2):152-178. Avise, J. C., J. Arnold, R. M. Ball, E. Bermingham, T.
Lamb, J. E. Neigel, C. A. Reeb and N. C. Saunders. 1987. Intraspecific phylogeography:
the mitochondrial DNA bridge between population genetics and systematics. Ann.
Rev. Ecol. Syst. 18:489-522. Baldwin, B. G., D. W. Kyhos and J. Dvorak. 1990.
Chloroplast DNA evolution and adaptive radiation in the Hawaiian silversword alliance
(Asteraceae-Madiinae). Baldwin, B. G. and R. H. Robichaux. 1995. Historical
biogeography and ecology of the Hawaiian silversword alliance (Asteraceae): New molecular
phylogenetic perspectives.Pp. 259-287. In Wagner, W. L. and V.
Funk (Eds.) Hawaiian Biogeography, Evolution on a Hot Spot Archipelago.
Smithsonian Institution Press, Baldwin, B. G., and Sanderson, M. J. (1998). “Age
and rate of diversification of the Hawaiian silversword alliance (Compositae).”
Proceedings of the National Ball, I.R. 1976. Nature and formulation of biogeographical
hypotheses. Syst. Zool. 24:407-430. **Brooks, D.R., & D. McLennan. 1991. Phylogeny,
Ecology, and Behavior. University of *Brooks, D. R. 1990. Parsimony analyisis in historical
biogeography and coevolution: Methodological and theoretical update. Syst. Zool.
39:14-30. Carpenter, J M. Phylogeny and biogeography of Polistes.
Turillazzi, S. and M. J. West- Eberhard (Ed.). Natural history and evolution of
paper-wasps; International Workshop, University Press: 18-57. Coscaron, M D C; Morrone, J J. Cladistics and biogeography
of the assassin bug genus Melanolestes Stal (Heteroptera: Reduviidae). Proceedings
of the Entomological Society of Cracraft, J. Cladistic analysis and vicariance
biogeography. Slatkin, M. (Ed.). Exploring evolutionary biology: Associates, Inc.: De Meyer, M. Cladistic and biogeographic analyses of Hawaiian
Pipunculidae (Diptera)revisited. Cladistics, v.12, n.4, (1996):
291-303. Emerson, B C; Wallis, G P; Patrick, B H. Biogeographic
area relationships in southern Biogeography, v.24, n.1, (1997): 89-99. Enghoff, H. Historical biogeography of the Holarctic: Area
relationships, ancestral areas, and dispersal of non-marine animals. Cladistics, v.11,
n.3, (1995): 223-263. Evans, B J; Morales, J C; Picker, M D; Kelley, D B;
Melnick, D J. Comparative molecular phylogeography of two Xenopus species, X. gilli
and X. laevis, in the south-western 333-343. Grant, P. R. (1998). “Radiations, communities, and
biogeography.” Evolution on islands, P. R. Grant, ed., Gray, J. and A.J. Boucot (eds.). 1979. Historical
Biogeography, Plate Tectonics, and the Changing Environment, Kluge, A. G. 1988. Parsimony in vicariance biogeography: a
quantitative method and a greater Antillean example. Syst. Zool. 37:315-328. Linder, H P; Crisp, M D. Nothofagus and Pacific
biogeography. Cladistics, v.11, n.1, (1995): 5-32. Lydeard, C. M.C. Wooten, and A. Meyer. 1995. Molecules,
morphology and area cladeograms: a cladistic and biogeographic analysis of
Gambusia (Teleostei: Poecilliiae) Syst. Biol. 44:221-236. Minaka, N. Vicariance in historical biogeography:
Analytical problems in reconstructing area cladograms. Acta Phytotaxonomica et Geobotanica,
v.44, n.2, (1993): 151- 184. Language: Japanese. Morrone J.J. and Carpenter, J.M. 1994. In search of a
method for cladistic biogeography - an comparison of component analysis, brooks parsimony
analysis, and three area statements. Cladistics 10(2):99-153. Nelson, G. 1985. A decade of challenge the future of
biogeography. Earth Sciences History 4(2):187-196. Nelson, G. and N. Platnick. 1981. Systematics and
biogeography. Cladistics and vicariance. Nelson, G. and Rosen, D.E. (eds.). 1981. Vicariance
biogeography: a critique. Nelson, G; Ladiges, P Y. Paralogy in cladistic
biogeography and analysis of paralogyfreesubtrees. American Museum Novitates, n.3167, (1996): 1-58. Page, R. D. M. 1989. Comments on component-compatibility
in historical biogeography.Cladistics 5: 167-182. Page, R. D. M. 1994. Maps between trees and cladistic
analysis of historical associations among genes, organisms, and areas. Syst. Biol. 43: 58-77. Page, R.D.M. 1994. Parallel phylogenies - reconstructing
the history of host-parasite assemblages. Cladistics 10(2): 155-173 Pielou, E. C. 1979. Biogeography. John Wiley and Sons; Rosen, D. E. 1975. A vicariance model of 464. Rosen, D. E. 1978. Vicariant patterns and historical
explanation in biogeography. Syst. Zool. 27: 159-188. Rosen, D. E. 1979. Fishes from the upland and intermontane
basins of revisionary studies and comparative geography. Bull. Amer.
Mus. Nat. Hist. 162: 267-376. Siddall, M E. Phylogenetic covariance probability:
Confidence and historical associations. Systematic Biology, v.45, n.1, (1996):
48-66. Springer, V. G. 1982. Pacific plate biogeography, with
special reference to shorefishes. Smithsonian Contributions to Zoology 367:1-167. Swenson, U. and K. Bremer. 1997. Pacific Biogeography of
the Asteraceae genus Abrotanella (Senecioneae, Belnnospermatinae). Systematic
Botany 22: 493-508. Vermeij, G. J. 1978. Biogeography and adaptation. Wagner, W L. Hawaiian biogeography: Evolution on a hot
spot archipelago. Wagner, W. L. and V. A. Funk (Ed.). Hawaiian biogeography: Evolution
on a hot spot archipelago. xvii+467p. Smithsonian Institution Press: Weston, P H; Crisp, M D. Cladistic biogeography of
waratahs (Proteaceae:Embothrieae) and their allies across the Pacific. Australian Systematic
Botany, v.7, n.3, (1994): 225-249. Wiley, E. O. 1981. Phylogenetics: the theory and practice
of phylogenetic systematics. John Wiley and Sons, May 2:
Macroevolution: patterns of diversification and extinction Alroy, J. 2000. Understanding the dynamics of trends
within evolving lineages. Paleobiology 26: 319-329. Brooks, D. R. and D. A. McLennan. 1993. Comparative study
of adaptive radiations with an example using parasitic flatworms
(Platyhelminthes, Cercomeria). Am. Nat. 142: 755-778. Charlesworth, B., R. Lande and M. Slatkin. 1982. A
neo-Darwinian commentary on macroevolution. Evol. 36:474-498. diversity in Mesozoic atelostomate echinoids. Paleobiology
26: 56-79. Gilinsky, N.L. and I.J. Good. 1991. Probabilities of
origination, persistence, and extinction of families of marine invertebrate life.
Paleobiology 17(2):145-66 Gould, S. J. and N. Eldredge. 1977. Punctuated equilibria:
the tempo and mode of evolution reconsidered. Paleobiol. 3:115-151. Gould, S.J., N.L. Gilinsky & R.Z. German 1987.
Asymmetry and the direction of evolutionary time. Science 236:1437-1441. Gould, S.J. 1991. The disparity of the Burgess Shale
arthropod fauna and the limits of cladistic analysis: why we must strive to quantify
morphospace. Paleobiology 17(4): 411-23. Hey, J. 1992. Using phylogenetic trees to study speciation
and extinction. Evol. 46: 627-640. Jablonski, D., J.J. Sepkoski, Jr., D.J. Bottjer, and P.M.
Sheehan. 1983. Onshore-offshore patterns in the evolution of Phanerozoic shelf
communities. Science 222: 1123-1125. Jablonski, D. 1986. Background and mass extinctions: the
alternation of macroevolutionary regimes. Science 231: 129-133. Jablonski, D. 1987. Heritability at the species level:
Analysis of geographic ranges of cretaceous mollusks. Science 238: 360-363. Jablonski, D. 2000. Micro- and macroevolution: scale and
heirarchy in evolutionary biology and paleobiology. Paleobiology 26 (supplement to
4): 15-52. Jeffery, C. H. 2001. Heart urchins at the
Cretaceous/Tertiary boundary: a tale of two clades. Paleobiology 27: 104-125. Kubo, T. and phylogenies. Evol. 49: 694-704. ** cladistic analysis: evidence against rectangular
evolution. Evolution 43:1538-1554. Levington, J. S. and C. M. Simon. 1980. A critique of the
punctuated equilibria model and implications for the detection of speciation in the
fossil record. Syst. Zool. 29:130-142. McShea, D. W. 2000. Trends, tools, and terminology.
Paleobiology 26: 330-333. ** Mindell, D. P., J. W. Sites Jr. and D. Graur.
1989. Speciational evolution: A phylogenetic test with allozymes in Sceloporus (Reptilia).
Cladistics 5:49-61. Norris, R.D. 1991. Biased extinction and evolutionary
trends. Paleobiology 17:388-99. Norris, R. D. 2000. Pelagic species diversity,
biogeography, and evolution. Paleobiology 26 (supplement to 4): 236-258. Patterson, C. and A.B. Smith 1987. Is the periodicity of
extinctions a taxonomic artefact? [and reply by Sepkoski] Nature 330:248-252. Raup, D.M. and J.J. Sepkoski 1986. Periodic extinction of
families and genera. Science. 231:833-836. Robeck, H. E., C. C. Maley, and M. J. Donoghue. 2000.
Taxonomy and temporal diversity patterns. Paleobiology 26: 171-187. Rohde, K. 1996. Robust phylogenies and adaptive
radiations: a critical evaluation of methods used to identify key innovations. Am. Nat. 148:
481-500. Roopnarine, P. D., G. Byars, and P. Fitzgerald. 1999.
Anagenetic evolution, stratophenetic patterns and random walk models.
Paleobiology 25: 41-57. Schopf, T. M. J. 1981. Punctuated equilibria and
evolutionary stasis. Paleobiol. 7:156- 166. Shubin, N. H. and C. R. Marshall. 2000. Fossils, genes,
and the origin of novelty. Paleobiology 26 (supplement to 4): 324-340. Smith, A.B. & C. Patterson. 1988. The influence of
taxonomic method on the perception of patterns of evolution, Evol. Biol. 23:127-216. Smith, A. B. 1994. Systematics and the fossil record:
documenting evolutionary patterns. Blackwell Scientific Publications, Smith, L. H. and B. S. Lieberman. 1999. Disparity and
constraint in the olenelloid trilobites and the Cambrian rasiation. Paleobiology 25:
459-470. Stanley, S. M. 1982. Macroevolution and the fossil record.
Evol. 36:460-473. Stidd, B. M. 1985. Are punctuationists wrong about the
modern synthesis? Phil. Sci. 52:98-109. Van Valen, L.M. and V.C. Maiorana. 1985. Patterns of
origination. Evol. Theory 7: 107-125. Vrba, E.S. 1980. Evolution, species and fossils: how does
life evolve? S. Afr. J. Sci. 76: 61-84. Wagner, P.J. 1995. Stratigraphic tests of cladistics
hypotheses. Paleobiology 21(2): 153- 178. Wagner, P.J. 1995. Diversity patterns among early
gastropds: contrasting taxonomic and phylogenetic descriptions. Paloebiology 21(4):410-439. Wagner, P. J. 1996. Contrasting the underlying patterns of
active trends in morphological evolution. Evolution 50: 990-1007. Wagner, P. J. 2000. Exhaustion of morphologic character
states among fossil taxa. Evolution 54: 365-386. Williamson, P. G. 1981. Paleontological documentation of
speciation in Cenozoic mollusks from Volume 26, Number 4, for several papers commenting on
Williamson's work.] May 4: COMPARATIVE
METHODS Brooks, D.R., & D. McLennan. 1991. Phylogeny, Ecology,
and Behavior. University of Burt, A. 1989. Comparative methods using phylogenetically
independent contrasts. Cheverud, J., and M. Dow. 1985. An autocorrelation
analysis of the effect of lineal fission on genetic variation among social groups. Amer.
J. Phys. Anthropol. 67:113-121. Cheverud, J. M., M. M. Dow, and W. Leutenegger. 1985. The
quantitative assessment of phylogenetic constraints in comparative analyses:
Sexual dimorphism in body weight among primates. Evolution, 39, 1335-1351. Cliff, A. D., and Ord, J. K. 1973. Spatial
Autocorrelation. Coddington, J. 1988. Cladistic tests of adaptational
hypotheses. Cladistics 4:3-22. de Queiroz, K. 1996. Including the characters of interest
during tree reconstruction and the problems of circularity and bias in studies of
character evolution. Am. Nat. 148: 700-708. Donoghue, M.J. 1989. Phylogenies and analysis of
evolutionary sequences, with examples from seed plants. Evolution 43:1137-1156. (maddison’s
test) Felsenstein, J. 1985. Phylogenies and the comparative
method. Am. Nat. 125:1- 15. Funk, V.A. and biology. Smithsonian Institution Press. biology. Martins, E. P. 1996. Phylogenies, spatial autoregression,
and the comparative method: A computer simulation test. Evolution,
v.50, n.5, 1750-1765. Martins, E. P., and Hansen, T. F. 1997. Phylogenies and
the comparative method: A general approach to incorporating phylogenetic
information into the analysis of interspecific data. Am. Nat. Miles, D. B. and A. E. Dunham. 1993. Historical
perspectives in ecology and evolutionary biology: the use of phylogenetic comparative
analyses. Ann. Rev. Ecol. Syst. 24: 587-619. Sillin-Tullberg, B. 1988. Evolution of gregariousness in
aposematic butterfly larvae: a phylogenetic analysis. Evolution 42: 293-305.
Sillin-Tullberg, B. 1988. Evolution of gregariousness in aposematic butterfly larvae: a
phylogenetic analysis. Evolution 42: 293-305. Vogl, C., and G. P. Wagner. 1990. Interspecific
variability in randomly evolving clades: models for testing hypotheses on the relative evolutionary
flexibility of quantitative traits. Sys. Zool. 39:109-123.149:646-667. |
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